CRC visualisations

Find below links to some visualisations for our colorectal cancer predict study.

Distinct gut microbiome patterns associate with consensus molecular subtypes of colorectal cancer. Purcell RV, Visnovska M, Biggs PJ, Schmeier S, Frizelle FA.
Scientific Reports, 2017, doi: 10.1038/s41598-017-11237-6 //

Kraken unmapped read classification for CRC sub-type 1 samples.

Kraken unmapped read classification for CRC sub-type 2 samples.

Kraken unmapped read classification for CRC sub-type 3 samples.

RNA-seq based tags-per-million gene expression per sample.

16S classification for CRC sub-type 1 samples.

16S classification for CRC sub-type 2 samples.

16S classification for CRC sub-type 3 samples.

Raw sequencing data can be found at the Sequence Read Archive.

Additiaonl material like raw data matrices and scripts can be found at the studies GitLab repo.

Dr. Sebastian Schmeier
Research Group Leader
Senior Lecturer in Bioinformatics/Genomics

Massey University, INMS
Auckland, New Zealand