CRC visualisations

Find below links to some visualisations for our colorectal cancer study.


RNA-seq

Taxonomic classification

Kraken unmapped read classification for CRC sub-type 1 samples.

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Taxonomic classification

Kraken unmapped read classification for CRC sub-type 2 samples.

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Taxonomic classification

Kraken unmapped read classification for CRC sub-type 3 samples.

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RNA-seq gene expression

RNA-seq based tags-per-million gene expression per sample.

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16S

Taxonomic classification

16S classification for CRC sub-type 1 samples.

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Taxonomic classification

16S classification for CRC sub-type 2 samples.

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Taxonomic classification

16S classification for CRC sub-type 3 samples.

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Data and scripts

Additiaonl material like raw data matrices and scripts can be found at the studies GitLab repo.


Contact

Dr. Sebastian Schmeier
Research Group Leader
Senior Lecturer in Bioinformatics/Genomics

Massey University, INMS
Auckland, New Zealand